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Creators/Authors contains: "Ernest, S_K Morgan"

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  1. A substantial increase in predictive capacity is needed to anticipate and mitigate the widespread change in ecosystems and their services in the face of climate and biodiversity crises. In this era of accelerating change, we cannot rely on historical patterns or focus primarily on long-term projections that extend decades into the future. In this Perspective, we discuss the potential of near-term (daily to decadal) iterative ecological forecasting to improve decision-making on actionable time frames. We summarize the current status of ecological forecasting and focus on how to scale up, build on lessons from weather forecasting, and take advantage of recent technological advances. We also highlight the need to focus on equity, workforce development, and broad cross-disciplinary and non-academic partnerships. 
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    Free, publicly-accessible full text available November 8, 2025
  2. BackgroundForecasting the responses of natural populations to environmental change is a key priority in the management of ecological systems. This is challenging because the dynamics of multi-species ecological communities are influenced by many factors. Populations can exhibit complex, nonlinear responses to environmental change, often over multiple temporal lags. In addition, biotic interactions, and other sources of multi-species dependence, are major contributors to patterns of population variation. Theory suggests that near-term ecological forecasts of population abundances can be improved by modelling these dependencies, but empirical support for this idea is lacking. MethodsWe test whether models that learn from multiple species, both to estimate nonlinear environmental effects and temporal interactions, improve ecological forecasts compared to simpler single species models for a semi-arid rodent community. Using dynamic generalized additive models, we analyze time series of monthly captures for nine rodent species over 25 years. ResultsModel comparisons provide strong evidence that multi-species dependencies improve both hindcast and forecast performance, as models that captured these effects gave superior predictions than models that ignored them. We show that changes in abundance for some species can have delayed, nonlinear effects on others, and that lagged, nonlinear effects of temperature and vegetation greenness are key drivers of changes in abundance for this system. ConclusionsOur findings highlight that multivariate models are useful not only to improve near-term ecological forecasts but also to ask targeted questions about ecological interactions and drivers of change. This study emphasizes the importance of jointly modelling species’ shared responses to the environment and their delayed temporal interactions when teasing apart community dynamics. 
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    Free, publicly-accessible full text available January 1, 2026
  3. ABSTRACT MotivationHere, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R package (BioTIMEr) to facilitate use of the database. Main Types of Variables IncludedThe database is composed of one main data table containing the abundance records and 11 metadata tables. The data are organised in a hierarchy of scales where 11,989,233 records are nested in 1,603,067 sample events, from 553,253 sampling locations, which are nested in 708 studies. A study is defined as a sampling methodology applied to an assemblage for a minimum of 2 years. Spatial Location and GrainSampling locations in BioTIME are distributed across the planet, including marine, terrestrial and freshwater realms. Spatial grain size and extent vary across studies depending on sampling methodology. We recommend gridding of sampling locations into areas of consistent size. Time Period and GrainThe earliest time series in BioTIME start in 1874, and the most recent records are from 2023. Temporal grain and duration vary across studies. We recommend doing sample‐level rarefaction to ensure consistent sampling effort through time before calculating any diversity metric. Major Taxa and Level of MeasurementThe database includes any eukaryotic taxa, with a combined total of 56,400 taxa. Software Formatcsv and. SQL. 
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    Free, publicly-accessible full text available May 1, 2026